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Lead in PDB 7d32: The Tba-PB2+ Complex in P41212 Space Group

Protein crystallography data

The structure of The Tba-PB2+ Complex in P41212 Space Group, PDB code: 7d32 was solved by H.H.Liu, Y.Q.Gao, J.Sheng, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.45 / 1.71
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 27.301, 53.107, 152.492, 90, 90, 90
R / Rfree (%) 18.9 / 21.5

Lead Binding Sites:

The binding sites of Lead atom in the The Tba-PB2+ Complex in P41212 Space Group (pdb code 7d32). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total 6 binding sites of Lead where determined in the The Tba-PB2+ Complex in P41212 Space Group, PDB code: 7d32:
Jump to Lead binding site number: 1; 2; 3; 4; 5; 6;

Lead binding site 1 out of 6 in 7d32

Go back to Lead Binding Sites List in 7d32
Lead binding site 1 out of 6 in the The Tba-PB2+ Complex in P41212 Space Group


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb101

b:18.1
occ:1.00
 O6 A:DG14 2.5 17.3 1.0
O6 A:DG5 2.6 18.3 1.0
O6 A:DG1 2.6 18.7 1.0
O6 A:DG11 2.7 15.7 1.0
O6 A:DG10 2.7 16.9 1.0
O6 A:DG15 2.7 18.8 1.0
O6 A:DG2 2.7 15.8 1.0
O6 A:DG6 2.8 18.5 1.0
C6 A:DG14 3.4 17.6 1.0
C6 A:DG5 3.5 18.3 1.0
C6 A:DG1 3.5 19.7 1.0
C6 A:DG10 3.6 17.1 1.0
C6 A:DG11 3.6 16.1 1.0
C6 A:DG15 3.6 19.5 1.0
C6 A:DG2 3.7 19.5 1.0
C6 A:DG6 3.7 18.5 1.0
N1 A:DG14 3.8 17.2 1.0
N1 A:DG11 3.8 16.1 1.0
N1 A:DG1 3.9 19.7 1.0
N1 A:DG5 3.9 19.1 1.0
N1 A:DG15 3.9 19.6 1.0
N1 A:DG10 3.9 17.3 1.0
N1 A:DG6 4.0 17.0 1.0
N1 A:DG2 4.0 16.3 1.0
C7 A:DT9 4.4 22.6 1.0
C5 A:DG14 4.6 18.0 1.0
C5 A:DG5 4.7 18.0 1.0
C5 A:DG1 4.7 20.6 1.0
C5 A:DG10 4.8 17.3 1.0
C5 A:DG11 4.9 16.7 1.0
C5 A:DG15 4.9 20.5 1.0
C7 A:DT13 5.0 15.4 1.0

Lead binding site 2 out of 6 in 7d32

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Lead binding site 2 out of 6 in the The Tba-PB2+ Complex in P41212 Space Group


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 2 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pb101

b:15.5
occ:1.00
 O6 B:DG5 2.6 15.1 1.0
O6 B:DG11 2.6 13.6 1.0
O6 B:DG1 2.6 13.9 1.0
O6 B:DG10 2.6 12.3 1.0
O6 B:DG14 2.6 13.7 1.0
O6 B:DG2 2.7 14.8 1.0
O6 B:DG15 2.7 13.2 1.0
O6 B:DG6 2.7 14.3 1.0
C6 B:DG5 3.5 15.1 1.0
C6 B:DG14 3.5 14.1 1.0
C6 B:DG1 3.5 14.0 1.0
C6 B:DG10 3.5 14.0 1.0
C6 B:DG11 3.6 14.5 1.0
C6 B:DG2 3.6 14.4 1.0
C6 B:DG6 3.7 14.9 1.0
C6 B:DG15 3.7 13.8 1.0
N1 B:DG5 3.8 15.3 1.0
N1 B:DG14 3.8 14.4 1.0
N1 B:DG10 3.9 14.6 1.0
N1 B:DG2 3.9 14.2 1.0
N1 B:DG11 3.9 14.8 1.0
N1 B:DG1 3.9 14.3 1.0
N1 B:DG6 3.9 14.9 1.0
N1 B:DG15 4.0 14.2 1.0
C5 B:DG5 4.7 15.4 1.0
C5 B:DG1 4.7 14.7 1.0
C5 B:DG14 4.7 14.7 1.0
C7 B:DT9 4.8 14.6 1.0
C5 B:DG10 4.8 14.9 1.0
C5 B:DG11 4.8 15.4 1.0
C5 B:DG2 4.9 14.3 1.0
C5 B:DG6 5.0 16.8 1.0
C5 B:DG15 5.0 14.2 1.0

Lead binding site 3 out of 6 in 7d32

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Lead binding site 3 out of 6 in the The Tba-PB2+ Complex in P41212 Space Group


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 3 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pb101

b:13.2
occ:1.00
 O6 C:DG1 2.5 12.3 1.0
O6 C:DG5 2.6 12.0 1.0
O6 C:DG10 2.6 13.0 1.0
O6 C:DG14 2.6 12.1 1.0
O6 C:DG11 2.6 12.5 1.0
O6 C:DG2 2.7 11.6 1.0
O6 C:DG6 2.7 12.8 1.0
O6 C:DG15 2.8 12.7 1.0
C6 C:DG1 3.4 12.7 1.0
C6 C:DG5 3.5 12.0 1.0
C6 C:DG14 3.5 12.5 1.0
C6 C:DG10 3.5 12.9 1.0
C6 C:DG11 3.6 12.4 1.0
C6 C:DG2 3.6 11.9 1.0
C6 C:DG15 3.7 12.8 1.0
C6 C:DG6 3.7 12.7 1.0
N1 C:DG5 3.8 12.3 1.0
N1 C:DG1 3.9 13.1 1.0
N1 C:DG11 3.9 12.5 1.0
N1 C:DG14 3.9 12.9 1.0
N1 C:DG2 3.9 11.8 1.0
N1 C:DG10 3.9 11.4 1.0
N1 C:DG15 4.0 12.6 1.0
N1 C:DG6 4.0 12.1 1.0
C5 C:DG1 4.6 12.7 1.0
C7 C:DT9 4.7 14.7 1.0
C5 C:DG5 4.7 12.6 1.0
C5 C:DG14 4.7 12.5 1.0
C5 C:DG10 4.7 13.4 1.0
C5 C:DG11 4.9 12.7 1.0
C5 C:DG2 4.9 12.7 1.0
C5 C:DG15 5.0 12.4 1.0
C5 C:DG6 5.0 13.7 1.0

Lead binding site 4 out of 6 in 7d32

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Lead binding site 4 out of 6 in the The Tba-PB2+ Complex in P41212 Space Group


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 4 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pb101

b:13.8
occ:1.00
 O6 D:DG1 2.5 13.2 1.0
O6 D:DG14 2.6 12.6 1.0
O6 D:DG11 2.6 12.5 1.0
O6 D:DG5 2.6 9.4 1.0
O6 D:DG10 2.6 12.2 1.0
O6 D:DG2 2.7 12.0 1.0
O6 D:DG15 2.8 12.2 1.0
O6 D:DG6 2.8 12.1 1.0
C6 D:DG1 3.5 12.5 1.0
C6 D:DG14 3.5 11.8 1.0
C6 D:DG10 3.5 12.3 1.0
C6 D:DG5 3.5 12.6 1.0
C6 D:DG11 3.6 12.5 1.0
C6 D:DG2 3.7 11.8 1.0
C6 D:DG15 3.7 12.4 1.0
C6 D:DG6 3.7 12.6 1.0
N1 D:DG14 3.8 11.6 1.0
N1 D:DG10 3.9 12.6 1.0
N1 D:DG1 3.9 12.6 1.0
N1 D:DG11 3.9 12.4 1.0
N1 D:DG2 3.9 12.0 1.0
N1 D:DG5 3.9 12.3 1.0
N1 D:DG6 4.0 12.0 1.0
N1 D:DG15 4.0 12.3 1.0
C5 D:DG1 4.7 12.2 1.0
C5 D:DG14 4.7 12.2 1.0
C5 D:DG5 4.8 13.0 1.0
C5 D:DG10 4.8 12.7 1.0
C7 D:DT9 4.9 12.9 1.0
C5 D:DG11 4.9 12.6 1.0
C5 D:DG2 5.0 11.8 1.0

Lead binding site 5 out of 6 in 7d32

Go back to Lead Binding Sites List in 7d32
Lead binding site 5 out of 6 in the The Tba-PB2+ Complex in P41212 Space Group


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 5 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pb101

b:14.8
occ:1.00
 O6 E:DG1 2.5 13.3 1.0
O6 E:DG10 2.5 13.5 1.0
O6 E:DG14 2.6 13.3 1.0
O6 E:DG5 2.6 13.5 1.0
O6 E:DG2 2.7 13.8 1.0
O6 E:DG11 2.7 15.8 1.0
O6 E:DG6 2.7 14.1 1.0
O6 E:DG15 2.8 13.8 1.0
C6 E:DG10 3.5 14.2 1.0
C6 E:DG14 3.5 14.1 1.0
C6 E:DG5 3.5 14.6 1.0
C6 E:DG1 3.5 13.3 1.0
C6 E:DG11 3.6 16.1 1.0
C6 E:DG2 3.6 13.8 1.0
C6 E:DG6 3.7 15.1 1.0
C6 E:DG15 3.8 13.9 1.0
N1 E:DG5 3.8 14.6 1.0
N1 E:DG10 3.8 14.3 1.0
N1 E:DG14 3.8 14.7 1.0
N1 E:DG11 3.9 15.7 1.0
N1 E:DG1 3.9 12.9 1.0
N1 E:DG2 3.9 13.9 1.0
N1 E:DG6 4.0 15.3 1.0
N1 E:DG15 4.1 13.1 1.0
C5 E:DG14 4.7 14.7 1.0
C5 E:DG1 4.7 13.8 1.0
C5 E:DG10 4.7 15.2 1.0
C5 E:DG5 4.7 15.6 1.0
C7 E:DT9 4.8 13.8 1.0
C5 E:DG11 4.9 17.1 1.0
C5 E:DG2 4.9 14.2 1.0
C7 E:DT4 5.0 14.3 1.0
C5 E:DG6 5.0 15.9 1.0

Lead binding site 6 out of 6 in 7d32

Go back to Lead Binding Sites List in 7d32
Lead binding site 6 out of 6 in the The Tba-PB2+ Complex in P41212 Space Group


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 6 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Pb101

b:20.7
occ:1.00
 O6 F:DG10 2.5 18.7 1.0
O6 F:DG14 2.6 18.4 1.0
O6 F:DG11 2.6 19.6 1.0
O6 F:DG5 2.6 19.6 1.0
O6 F:DG1 2.7 18.7 1.0
O6 F:DG6 2.7 17.4 1.0
O6 F:DG15 2.7 20.4 1.0
O6 F:DG2 2.7 19.5 1.0
C6 F:DG5 3.5 18.9 1.0
C6 F:DG14 3.5 19.2 1.0
C6 F:DG10 3.5 19.6 1.0
C6 F:DG1 3.6 19.5 1.0
C6 F:DG11 3.6 19.0 1.0
C6 F:DG2 3.6 20.0 1.0
C6 F:DG6 3.6 19.4 1.0
C6 F:DG15 3.7 21.4 1.0
N1 F:DG5 3.8 18.8 1.0
N1 F:DG2 3.8 20.9 1.0
N1 F:DG1 3.8 18.9 1.0
N1 F:DG10 3.9 20.2 1.0
N1 F:DG14 3.9 18.9 1.0
N1 F:DG11 3.9 18.6 1.0
N1 F:DG6 3.9 19.0 1.0
N1 F:DG15 3.9 21.4 1.0
C5 F:DG14 4.7 20.6 1.0
C5 F:DG5 4.7 18.9 1.0
C5 F:DG10 4.7 20.1 1.0
C7 F:DT9 4.8 24.7 1.0
C5 F:DG1 4.8 21.5 1.0
C5 F:DG11 4.9 19.1 1.0
C5 F:DG2 4.9 20.2 1.0
C5 F:DG6 4.9 20.5 1.0
C5 F:DG15 5.0 23.1 1.0

Reference:

H.H.Liu, Y.Q.Gao, J.Sheng, J.H.Gan. The Tba-PB2+ Complex in P41212 Space Group To Be Published.
Page generated: Thu Oct 10 10:12:05 2024

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