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Lead in PDB 7d33: The PB2+ Complexed Structure of Tba G8C Mutant

Protein crystallography data

The structure of The PB2+ Complexed Structure of Tba G8C Mutant, PDB code: 7d33 was solved by H.H.Liu, Y.Q.Gao, J.Sheng, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.34 / 2.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.765, 51.941, 57.063, 90, 113.59, 90
R / Rfree (%) 21.2 / 24

Lead Binding Sites:

The binding sites of Lead atom in the The PB2+ Complexed Structure of Tba G8C Mutant (pdb code 7d33). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total 5 binding sites of Lead where determined in the The PB2+ Complexed Structure of Tba G8C Mutant, PDB code: 7d33:
Jump to Lead binding site number: 1; 2; 3; 4; 5;

Lead binding site 1 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 1 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb101

b:25.9
occ:1.00
O6 A:DG5 2.6 20.0 1.0
O6 A:DG2 2.6 19.2 1.0
O6 A:DG11 2.7 18.4 1.0
O6 A:DG14 2.7 19.4 1.0
O6 A:DG1 2.7 19.9 1.0
O6 A:DG10 2.7 19.2 1.0
O6 A:DG6 2.8 21.2 1.0
O6 A:DG15 2.8 19.7 1.0
C6 A:DG5 3.5 19.8 1.0
C6 A:DG2 3.5 20.6 1.0
C6 A:DG14 3.6 20.7 1.0
C6 A:DG11 3.6 17.8 1.0
C6 A:DG1 3.6 21.1 1.0
C6 A:DG10 3.6 19.1 1.0
C6 A:DG6 3.6 19.9 1.0
C6 A:DG15 3.7 20.7 1.0
N1 A:DG2 3.7 20.5 1.0
N1 A:DG5 3.8 18.1 1.0
N1 A:DG6 3.9 18.9 1.0
N1 A:DG11 3.9 18.4 1.0
N1 A:DG15 3.9 20.9 1.0
N1 A:DG14 3.9 21.3 1.0
N1 A:DG1 4.0 21.2 1.0
N1 A:DG10 4.0 19.8 1.0
C5 A:DG5 4.8 19.8 1.0
C5 A:DG14 4.8 22.0 1.0
C5 A:DG1 4.8 22.4 1.0
C5 A:DG10 4.8 20.0 1.0
C5 A:DG2 4.9 22.1 1.0
C7 A:DT9 4.9 28.3 1.0
C5 A:DG11 4.9 23.9 1.0
C5 A:DG6 5.0 18.2 1.0
C5 A:DG15 5.0 23.1 1.0

Lead binding site 2 out of 5 in 7d33

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Lead binding site 2 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 2 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pb101

b:26.8
occ:1.00
O6 B:DG5 2.6 19.2 1.0
O6 B:DG14 2.7 20.6 1.0
O6 B:DG6 2.7 20.0 1.0
O6 B:DG2 2.7 21.6 1.0
O6 B:DG11 2.7 21.4 1.0
O6 B:DG15 2.7 21.5 1.0
O6 B:DG10 2.8 19.9 1.0
O6 B:DG1 2.9 21.8 1.0
C6 B:DG5 3.5 19.6 1.0
C6 B:DG14 3.6 22.4 1.0
C6 B:DG10 3.6 19.9 1.0
C6 B:DG11 3.6 21.9 1.0
C6 B:DG2 3.6 21.7 1.0
C6 B:DG6 3.6 20.0 1.0
C6 B:DG15 3.6 22.6 1.0
C6 B:DG1 3.7 21.9 1.0
N1 B:DG11 3.8 20.7 1.0
N1 B:DG2 3.8 21.9 1.0
N1 B:DG5 3.8 19.7 1.0
N1 B:DG10 3.9 20.4 1.0
N1 B:DG6 3.9 19.2 1.0
N1 B:DG14 3.9 22.9 1.0
N1 B:DG15 3.9 24.0 1.0
N1 B:DG1 4.0 21.4 1.0
C5 B:DG5 4.8 20.0 1.0
C5 B:DG14 4.8 22.1 1.0
C7 B:DT9 4.8 25.1 1.0
C5 B:DG10 4.8 19.4 1.0
C5 B:DG2 4.9 22.7 1.0
C5 B:DG1 4.9 22.7 1.0
C5 B:DG11 4.9 21.9 1.0
C5 B:DG15 4.9 23.3 1.0
C5 B:DG6 5.0 20.6 1.0

Lead binding site 3 out of 5 in 7d33

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Lead binding site 3 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 3 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pb101

b:25.4
occ:1.00
O6 C:DG2 2.6 19.5 1.0
O6 C:DG14 2.6 22.6 1.0
O6 C:DG15 2.6 21.7 1.0
O6 C:DG5 2.7 19.3 1.0
O6 C:DG11 2.7 19.1 1.0
O6 C:DG1 2.8 20.9 1.0
O6 C:DG10 2.8 19.1 1.0
O6 C:DG6 2.8 22.8 1.0
C6 C:DG2 3.6 21.7 1.0
C6 C:DG14 3.6 22.4 1.0
C6 C:DG5 3.6 21.1 1.0
C6 C:DG15 3.6 23.1 1.0
C6 C:DG11 3.6 21.2 1.0
C6 C:DG1 3.7 23.1 1.0
C6 C:DG10 3.7 19.3 1.0
C6 C:DG6 3.7 20.9 1.0
N1 C:DG6 3.8 18.6 1.0
N1 C:DG11 3.9 18.2 1.0
N1 C:DG2 3.9 21.9 1.0
N1 C:DG5 3.9 23.9 1.0
N1 C:DG14 4.0 21.8 1.0
N1 C:DG15 4.0 23.6 1.0
N1 C:DG10 4.0 20.0 1.0
N1 C:DG1 4.0 23.3 1.0
C7 C:DT9 4.8 26.2 1.0
C5 C:DG14 4.8 23.9 1.0
C5 C:DG5 4.8 21.4 1.0
C5 C:DG1 4.9 23.7 1.0
C5 C:DG10 4.9 25.3 1.0
C5 C:DG2 4.9 23.3 1.0
C5 C:DG15 4.9 23.8 1.0
C5 C:DG11 5.0 22.2 1.0

Lead binding site 4 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 4 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 4 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pb101

b:25.9
occ:1.00
O6 D:DG15 2.7 23.2 1.0
O6 D:DG2 2.7 19.6 1.0
O6 D:DG14 2.7 20.4 1.0
O6 D:DG11 2.7 19.9 1.0
O6 D:DG5 2.7 19.1 1.0
O6 D:DG1 2.8 20.7 1.0
O6 D:DG10 2.8 21.5 1.0
O6 D:DG6 2.8 24.8 1.0
C6 D:DG14 3.6 22.4 1.0
C6 D:DG5 3.6 19.6 1.0
C6 D:DG10 3.6 21.4 1.0
C6 D:DG2 3.6 22.7 1.0
C6 D:DG15 3.7 24.8 1.0
C6 D:DG1 3.7 23.2 1.0
C6 D:DG11 3.7 20.8 1.0
C6 D:DG6 3.7 23.1 1.0
N1 D:DG14 3.8 21.3 1.0
N1 D:DG2 3.9 22.0 1.0
N1 D:DG5 3.9 19.5 1.0
N1 D:DG10 3.9 22.9 1.0
N1 D:DG6 3.9 21.7 1.0
N1 D:DG15 4.0 25.5 1.0
N1 D:DG11 4.0 21.9 1.0
N1 D:DG1 4.0 20.5 1.0
C5 D:DG10 4.8 20.6 1.0
C5 D:DG14 4.8 22.4 1.0
C7 D:DT9 4.8 28.4 1.0
C5 D:DG5 4.9 20.7 1.0
C5 D:DG1 4.9 25.2 1.0
C5 D:DG15 4.9 26.6 1.0
C5 D:DG2 5.0 23.7 1.0

Lead binding site 5 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 5 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 5 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pb101

b:26.3
occ:1.00
O6 E:DG14 2.6 23.4 1.0
O6 E:DG15 2.6 20.3 1.0
O6 E:DG2 2.6 20.3 1.0
O6 E:DG11 2.7 21.9 1.0
O6 E:DG5 2.7 18.2 1.0
O6 E:DG10 2.7 18.7 1.0
O6 E:DG1 2.8 24.4 1.0
O6 E:DG6 2.8 22.1 1.0
C6 E:DG14 3.5 20.9 1.0
C6 E:DG5 3.6 20.9 1.0
C6 E:DG10 3.6 22.8 1.0
C6 E:DG15 3.6 21.8 1.0
C6 E:DG11 3.6 21.6 1.0
C6 E:DG2 3.6 22.8 1.0
C6 E:DG6 3.7 21.8 1.0
C6 E:DG1 3.7 23.7 1.0
N1 E:DG5 3.8 21.0 1.0
N1 E:DG6 3.8 18.5 1.0
N1 E:DG11 3.8 21.7 1.0
N1 E:DG14 3.8 20.9 1.0
N1 E:DG15 3.8 23.0 1.0
N1 E:DG2 3.9 21.5 1.0
N1 E:DG10 3.9 22.9 1.0
N1 E:DG1 4.0 21.0 1.0
C5 E:DG14 4.7 20.8 1.0
C5 E:DG10 4.7 23.8 1.0
C7 E:DT9 4.8 23.4 1.0
C5 E:DG5 4.8 21.4 1.0
C5 E:DG15 4.9 23.9 1.0
C5 E:DG2 4.9 22.9 1.0
C5 E:DG11 4.9 21.9 1.0
C5 E:DG1 4.9 23.5 1.0

Reference:

H.H.Liu, Y.Q.Gao, J.Sheng, J.H.Gan. The PB2+ Complexed Structure of Tba G8C Mutant To Be Published.
Page generated: Fri Sep 24 16:35:56 2021

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