Atomistry » Lead » PDB 3fhh-8gbm » 7d33
Atomistry »
  Lead »
    PDB 3fhh-8gbm »
      7d33 »

Lead in PDB 7d33: The PB2+ Complexed Structure of Tba G8C Mutant

Protein crystallography data

The structure of The PB2+ Complexed Structure of Tba G8C Mutant, PDB code: 7d33 was solved by H.H.Liu, Y.Q.Gao, J.Sheng, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.34 / 2.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.765, 51.941, 57.063, 90, 113.59, 90
R / Rfree (%) 21.2 / 24

Lead Binding Sites:

The binding sites of Lead atom in the The PB2+ Complexed Structure of Tba G8C Mutant (pdb code 7d33). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total 5 binding sites of Lead where determined in the The PB2+ Complexed Structure of Tba G8C Mutant, PDB code: 7d33:
Jump to Lead binding site number: 1; 2; 3; 4; 5;

Lead binding site 1 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 1 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb101

b:25.9
occ:1.00
O6 A:DG5 2.6 20.0 1.0
O6 A:DG2 2.6 19.2 1.0
O6 A:DG11 2.7 18.4 1.0
O6 A:DG14 2.7 19.4 1.0
O6 A:DG1 2.7 19.9 1.0
O6 A:DG10 2.7 19.2 1.0
O6 A:DG6 2.8 21.2 1.0
O6 A:DG15 2.8 19.7 1.0
C6 A:DG5 3.5 19.8 1.0
C6 A:DG2 3.5 20.6 1.0
C6 A:DG14 3.6 20.7 1.0
C6 A:DG11 3.6 17.8 1.0
C6 A:DG1 3.6 21.1 1.0
C6 A:DG10 3.6 19.1 1.0
C6 A:DG6 3.6 19.9 1.0
C6 A:DG15 3.7 20.7 1.0
N1 A:DG2 3.7 20.5 1.0
N1 A:DG5 3.8 18.1 1.0
N1 A:DG6 3.9 18.9 1.0
N1 A:DG11 3.9 18.4 1.0
N1 A:DG15 3.9 20.9 1.0
N1 A:DG14 3.9 21.3 1.0
N1 A:DG1 4.0 21.2 1.0
N1 A:DG10 4.0 19.8 1.0
C5 A:DG5 4.8 19.8 1.0
C5 A:DG14 4.8 22.0 1.0
C5 A:DG1 4.8 22.4 1.0
C5 A:DG10 4.8 20.0 1.0
C5 A:DG2 4.9 22.1 1.0
C7 A:DT9 4.9 28.3 1.0
C5 A:DG11 4.9 23.9 1.0
C5 A:DG6 5.0 18.2 1.0
C5 A:DG15 5.0 23.1 1.0

Lead binding site 2 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 2 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 2 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pb101

b:26.8
occ:1.00
O6 B:DG5 2.6 19.2 1.0
O6 B:DG14 2.7 20.6 1.0
O6 B:DG6 2.7 20.0 1.0
O6 B:DG2 2.7 21.6 1.0
O6 B:DG11 2.7 21.4 1.0
O6 B:DG15 2.7 21.5 1.0
O6 B:DG10 2.8 19.9 1.0
O6 B:DG1 2.9 21.8 1.0
C6 B:DG5 3.5 19.6 1.0
C6 B:DG14 3.6 22.4 1.0
C6 B:DG10 3.6 19.9 1.0
C6 B:DG11 3.6 21.9 1.0
C6 B:DG2 3.6 21.7 1.0
C6 B:DG6 3.6 20.0 1.0
C6 B:DG15 3.6 22.6 1.0
C6 B:DG1 3.7 21.9 1.0
N1 B:DG11 3.8 20.7 1.0
N1 B:DG2 3.8 21.9 1.0
N1 B:DG5 3.8 19.7 1.0
N1 B:DG10 3.9 20.4 1.0
N1 B:DG6 3.9 19.2 1.0
N1 B:DG14 3.9 22.9 1.0
N1 B:DG15 3.9 24.0 1.0
N1 B:DG1 4.0 21.4 1.0
C5 B:DG5 4.8 20.0 1.0
C5 B:DG14 4.8 22.1 1.0
C7 B:DT9 4.8 25.1 1.0
C5 B:DG10 4.8 19.4 1.0
C5 B:DG2 4.9 22.7 1.0
C5 B:DG1 4.9 22.7 1.0
C5 B:DG11 4.9 21.9 1.0
C5 B:DG15 4.9 23.3 1.0
C5 B:DG6 5.0 20.6 1.0

Lead binding site 3 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 3 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 3 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pb101

b:25.4
occ:1.00
O6 C:DG2 2.6 19.5 1.0
O6 C:DG14 2.6 22.6 1.0
O6 C:DG15 2.6 21.7 1.0
O6 C:DG5 2.7 19.3 1.0
O6 C:DG11 2.7 19.1 1.0
O6 C:DG1 2.8 20.9 1.0
O6 C:DG10 2.8 19.1 1.0
O6 C:DG6 2.8 22.8 1.0
C6 C:DG2 3.6 21.7 1.0
C6 C:DG14 3.6 22.4 1.0
C6 C:DG5 3.6 21.1 1.0
C6 C:DG15 3.6 23.1 1.0
C6 C:DG11 3.6 21.2 1.0
C6 C:DG1 3.7 23.1 1.0
C6 C:DG10 3.7 19.3 1.0
C6 C:DG6 3.7 20.9 1.0
N1 C:DG6 3.8 18.6 1.0
N1 C:DG11 3.9 18.2 1.0
N1 C:DG2 3.9 21.9 1.0
N1 C:DG5 3.9 23.9 1.0
N1 C:DG14 4.0 21.8 1.0
N1 C:DG15 4.0 23.6 1.0
N1 C:DG10 4.0 20.0 1.0
N1 C:DG1 4.0 23.3 1.0
C7 C:DT9 4.8 26.2 1.0
C5 C:DG14 4.8 23.9 1.0
C5 C:DG5 4.8 21.4 1.0
C5 C:DG1 4.9 23.7 1.0
C5 C:DG10 4.9 25.3 1.0
C5 C:DG2 4.9 23.3 1.0
C5 C:DG15 4.9 23.8 1.0
C5 C:DG11 5.0 22.2 1.0

Lead binding site 4 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 4 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 4 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pb101

b:25.9
occ:1.00
O6 D:DG15 2.7 23.2 1.0
O6 D:DG2 2.7 19.6 1.0
O6 D:DG14 2.7 20.4 1.0
O6 D:DG11 2.7 19.9 1.0
O6 D:DG5 2.7 19.1 1.0
O6 D:DG1 2.8 20.7 1.0
O6 D:DG10 2.8 21.5 1.0
O6 D:DG6 2.8 24.8 1.0
C6 D:DG14 3.6 22.4 1.0
C6 D:DG5 3.6 19.6 1.0
C6 D:DG10 3.6 21.4 1.0
C6 D:DG2 3.6 22.7 1.0
C6 D:DG15 3.7 24.8 1.0
C6 D:DG1 3.7 23.2 1.0
C6 D:DG11 3.7 20.8 1.0
C6 D:DG6 3.7 23.1 1.0
N1 D:DG14 3.8 21.3 1.0
N1 D:DG2 3.9 22.0 1.0
N1 D:DG5 3.9 19.5 1.0
N1 D:DG10 3.9 22.9 1.0
N1 D:DG6 3.9 21.7 1.0
N1 D:DG15 4.0 25.5 1.0
N1 D:DG11 4.0 21.9 1.0
N1 D:DG1 4.0 20.5 1.0
C5 D:DG10 4.8 20.6 1.0
C5 D:DG14 4.8 22.4 1.0
C7 D:DT9 4.8 28.4 1.0
C5 D:DG5 4.9 20.7 1.0
C5 D:DG1 4.9 25.2 1.0
C5 D:DG15 4.9 26.6 1.0
C5 D:DG2 5.0 23.7 1.0

Lead binding site 5 out of 5 in 7d33

Go back to Lead Binding Sites List in 7d33
Lead binding site 5 out of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 5 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pb101

b:26.3
occ:1.00
O6 E:DG14 2.6 23.4 1.0
O6 E:DG15 2.6 20.3 1.0
O6 E:DG2 2.6 20.3 1.0
O6 E:DG11 2.7 21.9 1.0
O6 E:DG5 2.7 18.2 1.0
O6 E:DG10 2.7 18.7 1.0
O6 E:DG1 2.8 24.4 1.0
O6 E:DG6 2.8 22.1 1.0
C6 E:DG14 3.5 20.9 1.0
C6 E:DG5 3.6 20.9 1.0
C6 E:DG10 3.6 22.8 1.0
C6 E:DG15 3.6 21.8 1.0
C6 E:DG11 3.6 21.6 1.0
C6 E:DG2 3.6 22.8 1.0
C6 E:DG6 3.7 21.8 1.0
C6 E:DG1 3.7 23.7 1.0
N1 E:DG5 3.8 21.0 1.0
N1 E:DG6 3.8 18.5 1.0
N1 E:DG11 3.8 21.7 1.0
N1 E:DG14 3.8 20.9 1.0
N1 E:DG15 3.8 23.0 1.0
N1 E:DG2 3.9 21.5 1.0
N1 E:DG10 3.9 22.9 1.0
N1 E:DG1 4.0 21.0 1.0
C5 E:DG14 4.7 20.8 1.0
C5 E:DG10 4.7 23.8 1.0
C7 E:DT9 4.8 23.4 1.0
C5 E:DG5 4.8 21.4 1.0
C5 E:DG15 4.9 23.9 1.0
C5 E:DG2 4.9 22.9 1.0
C5 E:DG11 4.9 21.9 1.0
C5 E:DG1 4.9 23.5 1.0

Reference:

H.H.Liu, Y.Q.Gao, J.Sheng, J.H.Gan. The PB2+ Complexed Structure of Tba G8C Mutant To Be Published.
Page generated: Thu Oct 10 10:12:26 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy