Lead in PDB 7d33: The PB2+ Complexed Structure of Tba G8C Mutant
Protein crystallography data
The structure of The PB2+ Complexed Structure of Tba G8C Mutant, PDB code: 7d33
was solved by
H.H.Liu,
Y.Q.Gao,
J.Sheng,
J.H.Gan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.34 /
2.12
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.765,
51.941,
57.063,
90,
113.59,
90
|
R / Rfree (%)
|
21.2 /
24
|
Lead Binding Sites:
The binding sites of Lead atom in the The PB2+ Complexed Structure of Tba G8C Mutant
(pdb code 7d33). This binding sites where shown within
5.0 Angstroms radius around Lead atom.
In total 5 binding sites of Lead where determined in the
The PB2+ Complexed Structure of Tba G8C Mutant, PDB code: 7d33:
Jump to Lead binding site number:
1;
2;
3;
4;
5;
Lead binding site 1 out
of 5 in 7d33
Go back to
Lead Binding Sites List in 7d33
Lead binding site 1 out
of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 1 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pb101
b:25.9
occ:1.00
|
O6
|
A:DG5
|
2.6
|
20.0
|
1.0
|
O6
|
A:DG2
|
2.6
|
19.2
|
1.0
|
O6
|
A:DG11
|
2.7
|
18.4
|
1.0
|
O6
|
A:DG14
|
2.7
|
19.4
|
1.0
|
O6
|
A:DG1
|
2.7
|
19.9
|
1.0
|
O6
|
A:DG10
|
2.7
|
19.2
|
1.0
|
O6
|
A:DG6
|
2.8
|
21.2
|
1.0
|
O6
|
A:DG15
|
2.8
|
19.7
|
1.0
|
C6
|
A:DG5
|
3.5
|
19.8
|
1.0
|
C6
|
A:DG2
|
3.5
|
20.6
|
1.0
|
C6
|
A:DG14
|
3.6
|
20.7
|
1.0
|
C6
|
A:DG11
|
3.6
|
17.8
|
1.0
|
C6
|
A:DG1
|
3.6
|
21.1
|
1.0
|
C6
|
A:DG10
|
3.6
|
19.1
|
1.0
|
C6
|
A:DG6
|
3.6
|
19.9
|
1.0
|
C6
|
A:DG15
|
3.7
|
20.7
|
1.0
|
N1
|
A:DG2
|
3.7
|
20.5
|
1.0
|
N1
|
A:DG5
|
3.8
|
18.1
|
1.0
|
N1
|
A:DG6
|
3.9
|
18.9
|
1.0
|
N1
|
A:DG11
|
3.9
|
18.4
|
1.0
|
N1
|
A:DG15
|
3.9
|
20.9
|
1.0
|
N1
|
A:DG14
|
3.9
|
21.3
|
1.0
|
N1
|
A:DG1
|
4.0
|
21.2
|
1.0
|
N1
|
A:DG10
|
4.0
|
19.8
|
1.0
|
C5
|
A:DG5
|
4.8
|
19.8
|
1.0
|
C5
|
A:DG14
|
4.8
|
22.0
|
1.0
|
C5
|
A:DG1
|
4.8
|
22.4
|
1.0
|
C5
|
A:DG10
|
4.8
|
20.0
|
1.0
|
C5
|
A:DG2
|
4.9
|
22.1
|
1.0
|
C7
|
A:DT9
|
4.9
|
28.3
|
1.0
|
C5
|
A:DG11
|
4.9
|
23.9
|
1.0
|
C5
|
A:DG6
|
5.0
|
18.2
|
1.0
|
C5
|
A:DG15
|
5.0
|
23.1
|
1.0
|
|
Lead binding site 2 out
of 5 in 7d33
Go back to
Lead Binding Sites List in 7d33
Lead binding site 2 out
of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 2 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Pb101
b:26.8
occ:1.00
|
O6
|
B:DG5
|
2.6
|
19.2
|
1.0
|
O6
|
B:DG14
|
2.7
|
20.6
|
1.0
|
O6
|
B:DG6
|
2.7
|
20.0
|
1.0
|
O6
|
B:DG2
|
2.7
|
21.6
|
1.0
|
O6
|
B:DG11
|
2.7
|
21.4
|
1.0
|
O6
|
B:DG15
|
2.7
|
21.5
|
1.0
|
O6
|
B:DG10
|
2.8
|
19.9
|
1.0
|
O6
|
B:DG1
|
2.9
|
21.8
|
1.0
|
C6
|
B:DG5
|
3.5
|
19.6
|
1.0
|
C6
|
B:DG14
|
3.6
|
22.4
|
1.0
|
C6
|
B:DG10
|
3.6
|
19.9
|
1.0
|
C6
|
B:DG11
|
3.6
|
21.9
|
1.0
|
C6
|
B:DG2
|
3.6
|
21.7
|
1.0
|
C6
|
B:DG6
|
3.6
|
20.0
|
1.0
|
C6
|
B:DG15
|
3.6
|
22.6
|
1.0
|
C6
|
B:DG1
|
3.7
|
21.9
|
1.0
|
N1
|
B:DG11
|
3.8
|
20.7
|
1.0
|
N1
|
B:DG2
|
3.8
|
21.9
|
1.0
|
N1
|
B:DG5
|
3.8
|
19.7
|
1.0
|
N1
|
B:DG10
|
3.9
|
20.4
|
1.0
|
N1
|
B:DG6
|
3.9
|
19.2
|
1.0
|
N1
|
B:DG14
|
3.9
|
22.9
|
1.0
|
N1
|
B:DG15
|
3.9
|
24.0
|
1.0
|
N1
|
B:DG1
|
4.0
|
21.4
|
1.0
|
C5
|
B:DG5
|
4.8
|
20.0
|
1.0
|
C5
|
B:DG14
|
4.8
|
22.1
|
1.0
|
C7
|
B:DT9
|
4.8
|
25.1
|
1.0
|
C5
|
B:DG10
|
4.8
|
19.4
|
1.0
|
C5
|
B:DG2
|
4.9
|
22.7
|
1.0
|
C5
|
B:DG1
|
4.9
|
22.7
|
1.0
|
C5
|
B:DG11
|
4.9
|
21.9
|
1.0
|
C5
|
B:DG15
|
4.9
|
23.3
|
1.0
|
C5
|
B:DG6
|
5.0
|
20.6
|
1.0
|
|
Lead binding site 3 out
of 5 in 7d33
Go back to
Lead Binding Sites List in 7d33
Lead binding site 3 out
of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 3 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Pb101
b:25.4
occ:1.00
|
O6
|
C:DG2
|
2.6
|
19.5
|
1.0
|
O6
|
C:DG14
|
2.6
|
22.6
|
1.0
|
O6
|
C:DG15
|
2.6
|
21.7
|
1.0
|
O6
|
C:DG5
|
2.7
|
19.3
|
1.0
|
O6
|
C:DG11
|
2.7
|
19.1
|
1.0
|
O6
|
C:DG1
|
2.8
|
20.9
|
1.0
|
O6
|
C:DG10
|
2.8
|
19.1
|
1.0
|
O6
|
C:DG6
|
2.8
|
22.8
|
1.0
|
C6
|
C:DG2
|
3.6
|
21.7
|
1.0
|
C6
|
C:DG14
|
3.6
|
22.4
|
1.0
|
C6
|
C:DG5
|
3.6
|
21.1
|
1.0
|
C6
|
C:DG15
|
3.6
|
23.1
|
1.0
|
C6
|
C:DG11
|
3.6
|
21.2
|
1.0
|
C6
|
C:DG1
|
3.7
|
23.1
|
1.0
|
C6
|
C:DG10
|
3.7
|
19.3
|
1.0
|
C6
|
C:DG6
|
3.7
|
20.9
|
1.0
|
N1
|
C:DG6
|
3.8
|
18.6
|
1.0
|
N1
|
C:DG11
|
3.9
|
18.2
|
1.0
|
N1
|
C:DG2
|
3.9
|
21.9
|
1.0
|
N1
|
C:DG5
|
3.9
|
23.9
|
1.0
|
N1
|
C:DG14
|
4.0
|
21.8
|
1.0
|
N1
|
C:DG15
|
4.0
|
23.6
|
1.0
|
N1
|
C:DG10
|
4.0
|
20.0
|
1.0
|
N1
|
C:DG1
|
4.0
|
23.3
|
1.0
|
C7
|
C:DT9
|
4.8
|
26.2
|
1.0
|
C5
|
C:DG14
|
4.8
|
23.9
|
1.0
|
C5
|
C:DG5
|
4.8
|
21.4
|
1.0
|
C5
|
C:DG1
|
4.9
|
23.7
|
1.0
|
C5
|
C:DG10
|
4.9
|
25.3
|
1.0
|
C5
|
C:DG2
|
4.9
|
23.3
|
1.0
|
C5
|
C:DG15
|
4.9
|
23.8
|
1.0
|
C5
|
C:DG11
|
5.0
|
22.2
|
1.0
|
|
Lead binding site 4 out
of 5 in 7d33
Go back to
Lead Binding Sites List in 7d33
Lead binding site 4 out
of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 4 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Pb101
b:25.9
occ:1.00
|
O6
|
D:DG15
|
2.7
|
23.2
|
1.0
|
O6
|
D:DG2
|
2.7
|
19.6
|
1.0
|
O6
|
D:DG14
|
2.7
|
20.4
|
1.0
|
O6
|
D:DG11
|
2.7
|
19.9
|
1.0
|
O6
|
D:DG5
|
2.7
|
19.1
|
1.0
|
O6
|
D:DG1
|
2.8
|
20.7
|
1.0
|
O6
|
D:DG10
|
2.8
|
21.5
|
1.0
|
O6
|
D:DG6
|
2.8
|
24.8
|
1.0
|
C6
|
D:DG14
|
3.6
|
22.4
|
1.0
|
C6
|
D:DG5
|
3.6
|
19.6
|
1.0
|
C6
|
D:DG10
|
3.6
|
21.4
|
1.0
|
C6
|
D:DG2
|
3.6
|
22.7
|
1.0
|
C6
|
D:DG15
|
3.7
|
24.8
|
1.0
|
C6
|
D:DG1
|
3.7
|
23.2
|
1.0
|
C6
|
D:DG11
|
3.7
|
20.8
|
1.0
|
C6
|
D:DG6
|
3.7
|
23.1
|
1.0
|
N1
|
D:DG14
|
3.8
|
21.3
|
1.0
|
N1
|
D:DG2
|
3.9
|
22.0
|
1.0
|
N1
|
D:DG5
|
3.9
|
19.5
|
1.0
|
N1
|
D:DG10
|
3.9
|
22.9
|
1.0
|
N1
|
D:DG6
|
3.9
|
21.7
|
1.0
|
N1
|
D:DG15
|
4.0
|
25.5
|
1.0
|
N1
|
D:DG11
|
4.0
|
21.9
|
1.0
|
N1
|
D:DG1
|
4.0
|
20.5
|
1.0
|
C5
|
D:DG10
|
4.8
|
20.6
|
1.0
|
C5
|
D:DG14
|
4.8
|
22.4
|
1.0
|
C7
|
D:DT9
|
4.8
|
28.4
|
1.0
|
C5
|
D:DG5
|
4.9
|
20.7
|
1.0
|
C5
|
D:DG1
|
4.9
|
25.2
|
1.0
|
C5
|
D:DG15
|
4.9
|
26.6
|
1.0
|
C5
|
D:DG2
|
5.0
|
23.7
|
1.0
|
|
Lead binding site 5 out
of 5 in 7d33
Go back to
Lead Binding Sites List in 7d33
Lead binding site 5 out
of 5 in the The PB2+ Complexed Structure of Tba G8C Mutant
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 5 of The PB2+ Complexed Structure of Tba G8C Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Pb101
b:26.3
occ:1.00
|
O6
|
E:DG14
|
2.6
|
23.4
|
1.0
|
O6
|
E:DG15
|
2.6
|
20.3
|
1.0
|
O6
|
E:DG2
|
2.6
|
20.3
|
1.0
|
O6
|
E:DG11
|
2.7
|
21.9
|
1.0
|
O6
|
E:DG5
|
2.7
|
18.2
|
1.0
|
O6
|
E:DG10
|
2.7
|
18.7
|
1.0
|
O6
|
E:DG1
|
2.8
|
24.4
|
1.0
|
O6
|
E:DG6
|
2.8
|
22.1
|
1.0
|
C6
|
E:DG14
|
3.5
|
20.9
|
1.0
|
C6
|
E:DG5
|
3.6
|
20.9
|
1.0
|
C6
|
E:DG10
|
3.6
|
22.8
|
1.0
|
C6
|
E:DG15
|
3.6
|
21.8
|
1.0
|
C6
|
E:DG11
|
3.6
|
21.6
|
1.0
|
C6
|
E:DG2
|
3.6
|
22.8
|
1.0
|
C6
|
E:DG6
|
3.7
|
21.8
|
1.0
|
C6
|
E:DG1
|
3.7
|
23.7
|
1.0
|
N1
|
E:DG5
|
3.8
|
21.0
|
1.0
|
N1
|
E:DG6
|
3.8
|
18.5
|
1.0
|
N1
|
E:DG11
|
3.8
|
21.7
|
1.0
|
N1
|
E:DG14
|
3.8
|
20.9
|
1.0
|
N1
|
E:DG15
|
3.8
|
23.0
|
1.0
|
N1
|
E:DG2
|
3.9
|
21.5
|
1.0
|
N1
|
E:DG10
|
3.9
|
22.9
|
1.0
|
N1
|
E:DG1
|
4.0
|
21.0
|
1.0
|
C5
|
E:DG14
|
4.7
|
20.8
|
1.0
|
C5
|
E:DG10
|
4.7
|
23.8
|
1.0
|
C7
|
E:DT9
|
4.8
|
23.4
|
1.0
|
C5
|
E:DG5
|
4.8
|
21.4
|
1.0
|
C5
|
E:DG15
|
4.9
|
23.9
|
1.0
|
C5
|
E:DG2
|
4.9
|
22.9
|
1.0
|
C5
|
E:DG11
|
4.9
|
21.9
|
1.0
|
C5
|
E:DG1
|
4.9
|
23.5
|
1.0
|
|
Reference:
H.H.Liu,
Y.Q.Gao,
J.Sheng,
J.H.Gan.
The PB2+ Complexed Structure of Tba G8C Mutant To Be Published.
Page generated: Thu Oct 10 10:12:26 2024
|