Lead in PDB 7d32: The Tba-PB2+ Complex in P41212 Space Group
Protein crystallography data
The structure of The Tba-PB2+ Complex in P41212 Space Group, PDB code: 7d32
was solved by
H.H.Liu,
Y.Q.Gao,
J.Sheng,
J.H.Gan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
26.45 /
1.71
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
27.301,
53.107,
152.492,
90,
90,
90
|
R / Rfree (%)
|
18.9 /
21.5
|
Lead Binding Sites:
The binding sites of Lead atom in the The Tba-PB2+ Complex in P41212 Space Group
(pdb code 7d32). This binding sites where shown within
5.0 Angstroms radius around Lead atom.
In total 6 binding sites of Lead where determined in the
The Tba-PB2+ Complex in P41212 Space Group, PDB code: 7d32:
Jump to Lead binding site number:
1;
2;
3;
4;
5;
6;
Lead binding site 1 out
of 6 in 7d32
Go back to
Lead Binding Sites List in 7d32
Lead binding site 1 out
of 6 in the The Tba-PB2+ Complex in P41212 Space Group
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 1 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Pb101
b:18.1
occ:1.00
|
O6
|
A:DG14
|
2.5
|
17.3
|
1.0
|
O6
|
A:DG5
|
2.6
|
18.3
|
1.0
|
O6
|
A:DG1
|
2.6
|
18.7
|
1.0
|
O6
|
A:DG11
|
2.7
|
15.7
|
1.0
|
O6
|
A:DG10
|
2.7
|
16.9
|
1.0
|
O6
|
A:DG15
|
2.7
|
18.8
|
1.0
|
O6
|
A:DG2
|
2.7
|
15.8
|
1.0
|
O6
|
A:DG6
|
2.8
|
18.5
|
1.0
|
C6
|
A:DG14
|
3.4
|
17.6
|
1.0
|
C6
|
A:DG5
|
3.5
|
18.3
|
1.0
|
C6
|
A:DG1
|
3.5
|
19.7
|
1.0
|
C6
|
A:DG10
|
3.6
|
17.1
|
1.0
|
C6
|
A:DG11
|
3.6
|
16.1
|
1.0
|
C6
|
A:DG15
|
3.6
|
19.5
|
1.0
|
C6
|
A:DG2
|
3.7
|
19.5
|
1.0
|
C6
|
A:DG6
|
3.7
|
18.5
|
1.0
|
N1
|
A:DG14
|
3.8
|
17.2
|
1.0
|
N1
|
A:DG11
|
3.8
|
16.1
|
1.0
|
N1
|
A:DG1
|
3.9
|
19.7
|
1.0
|
N1
|
A:DG5
|
3.9
|
19.1
|
1.0
|
N1
|
A:DG15
|
3.9
|
19.6
|
1.0
|
N1
|
A:DG10
|
3.9
|
17.3
|
1.0
|
N1
|
A:DG6
|
4.0
|
17.0
|
1.0
|
N1
|
A:DG2
|
4.0
|
16.3
|
1.0
|
C7
|
A:DT9
|
4.4
|
22.6
|
1.0
|
C5
|
A:DG14
|
4.6
|
18.0
|
1.0
|
C5
|
A:DG5
|
4.7
|
18.0
|
1.0
|
C5
|
A:DG1
|
4.7
|
20.6
|
1.0
|
C5
|
A:DG10
|
4.8
|
17.3
|
1.0
|
C5
|
A:DG11
|
4.9
|
16.7
|
1.0
|
C5
|
A:DG15
|
4.9
|
20.5
|
1.0
|
C7
|
A:DT13
|
5.0
|
15.4
|
1.0
|
|
Lead binding site 2 out
of 6 in 7d32
Go back to
Lead Binding Sites List in 7d32
Lead binding site 2 out
of 6 in the The Tba-PB2+ Complex in P41212 Space Group
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 2 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Pb101
b:15.5
occ:1.00
|
O6
|
B:DG5
|
2.6
|
15.1
|
1.0
|
O6
|
B:DG11
|
2.6
|
13.6
|
1.0
|
O6
|
B:DG1
|
2.6
|
13.9
|
1.0
|
O6
|
B:DG10
|
2.6
|
12.3
|
1.0
|
O6
|
B:DG14
|
2.6
|
13.7
|
1.0
|
O6
|
B:DG2
|
2.7
|
14.8
|
1.0
|
O6
|
B:DG15
|
2.7
|
13.2
|
1.0
|
O6
|
B:DG6
|
2.7
|
14.3
|
1.0
|
C6
|
B:DG5
|
3.5
|
15.1
|
1.0
|
C6
|
B:DG14
|
3.5
|
14.1
|
1.0
|
C6
|
B:DG1
|
3.5
|
14.0
|
1.0
|
C6
|
B:DG10
|
3.5
|
14.0
|
1.0
|
C6
|
B:DG11
|
3.6
|
14.5
|
1.0
|
C6
|
B:DG2
|
3.6
|
14.4
|
1.0
|
C6
|
B:DG6
|
3.7
|
14.9
|
1.0
|
C6
|
B:DG15
|
3.7
|
13.8
|
1.0
|
N1
|
B:DG5
|
3.8
|
15.3
|
1.0
|
N1
|
B:DG14
|
3.8
|
14.4
|
1.0
|
N1
|
B:DG10
|
3.9
|
14.6
|
1.0
|
N1
|
B:DG2
|
3.9
|
14.2
|
1.0
|
N1
|
B:DG11
|
3.9
|
14.8
|
1.0
|
N1
|
B:DG1
|
3.9
|
14.3
|
1.0
|
N1
|
B:DG6
|
3.9
|
14.9
|
1.0
|
N1
|
B:DG15
|
4.0
|
14.2
|
1.0
|
C5
|
B:DG5
|
4.7
|
15.4
|
1.0
|
C5
|
B:DG1
|
4.7
|
14.7
|
1.0
|
C5
|
B:DG14
|
4.7
|
14.7
|
1.0
|
C7
|
B:DT9
|
4.8
|
14.6
|
1.0
|
C5
|
B:DG10
|
4.8
|
14.9
|
1.0
|
C5
|
B:DG11
|
4.8
|
15.4
|
1.0
|
C5
|
B:DG2
|
4.9
|
14.3
|
1.0
|
C5
|
B:DG6
|
5.0
|
16.8
|
1.0
|
C5
|
B:DG15
|
5.0
|
14.2
|
1.0
|
|
Lead binding site 3 out
of 6 in 7d32
Go back to
Lead Binding Sites List in 7d32
Lead binding site 3 out
of 6 in the The Tba-PB2+ Complex in P41212 Space Group
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 3 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Pb101
b:13.2
occ:1.00
|
O6
|
C:DG1
|
2.5
|
12.3
|
1.0
|
O6
|
C:DG5
|
2.6
|
12.0
|
1.0
|
O6
|
C:DG10
|
2.6
|
13.0
|
1.0
|
O6
|
C:DG14
|
2.6
|
12.1
|
1.0
|
O6
|
C:DG11
|
2.6
|
12.5
|
1.0
|
O6
|
C:DG2
|
2.7
|
11.6
|
1.0
|
O6
|
C:DG6
|
2.7
|
12.8
|
1.0
|
O6
|
C:DG15
|
2.8
|
12.7
|
1.0
|
C6
|
C:DG1
|
3.4
|
12.7
|
1.0
|
C6
|
C:DG5
|
3.5
|
12.0
|
1.0
|
C6
|
C:DG14
|
3.5
|
12.5
|
1.0
|
C6
|
C:DG10
|
3.5
|
12.9
|
1.0
|
C6
|
C:DG11
|
3.6
|
12.4
|
1.0
|
C6
|
C:DG2
|
3.6
|
11.9
|
1.0
|
C6
|
C:DG15
|
3.7
|
12.8
|
1.0
|
C6
|
C:DG6
|
3.7
|
12.7
|
1.0
|
N1
|
C:DG5
|
3.8
|
12.3
|
1.0
|
N1
|
C:DG1
|
3.9
|
13.1
|
1.0
|
N1
|
C:DG11
|
3.9
|
12.5
|
1.0
|
N1
|
C:DG14
|
3.9
|
12.9
|
1.0
|
N1
|
C:DG2
|
3.9
|
11.8
|
1.0
|
N1
|
C:DG10
|
3.9
|
11.4
|
1.0
|
N1
|
C:DG15
|
4.0
|
12.6
|
1.0
|
N1
|
C:DG6
|
4.0
|
12.1
|
1.0
|
C5
|
C:DG1
|
4.6
|
12.7
|
1.0
|
C7
|
C:DT9
|
4.7
|
14.7
|
1.0
|
C5
|
C:DG5
|
4.7
|
12.6
|
1.0
|
C5
|
C:DG14
|
4.7
|
12.5
|
1.0
|
C5
|
C:DG10
|
4.7
|
13.4
|
1.0
|
C5
|
C:DG11
|
4.9
|
12.7
|
1.0
|
C5
|
C:DG2
|
4.9
|
12.7
|
1.0
|
C5
|
C:DG15
|
5.0
|
12.4
|
1.0
|
C5
|
C:DG6
|
5.0
|
13.7
|
1.0
|
|
Lead binding site 4 out
of 6 in 7d32
Go back to
Lead Binding Sites List in 7d32
Lead binding site 4 out
of 6 in the The Tba-PB2+ Complex in P41212 Space Group
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 4 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Pb101
b:13.8
occ:1.00
|
O6
|
D:DG1
|
2.5
|
13.2
|
1.0
|
O6
|
D:DG14
|
2.6
|
12.6
|
1.0
|
O6
|
D:DG11
|
2.6
|
12.5
|
1.0
|
O6
|
D:DG5
|
2.6
|
9.4
|
1.0
|
O6
|
D:DG10
|
2.6
|
12.2
|
1.0
|
O6
|
D:DG2
|
2.7
|
12.0
|
1.0
|
O6
|
D:DG15
|
2.8
|
12.2
|
1.0
|
O6
|
D:DG6
|
2.8
|
12.1
|
1.0
|
C6
|
D:DG1
|
3.5
|
12.5
|
1.0
|
C6
|
D:DG14
|
3.5
|
11.8
|
1.0
|
C6
|
D:DG10
|
3.5
|
12.3
|
1.0
|
C6
|
D:DG5
|
3.5
|
12.6
|
1.0
|
C6
|
D:DG11
|
3.6
|
12.5
|
1.0
|
C6
|
D:DG2
|
3.7
|
11.8
|
1.0
|
C6
|
D:DG15
|
3.7
|
12.4
|
1.0
|
C6
|
D:DG6
|
3.7
|
12.6
|
1.0
|
N1
|
D:DG14
|
3.8
|
11.6
|
1.0
|
N1
|
D:DG10
|
3.9
|
12.6
|
1.0
|
N1
|
D:DG1
|
3.9
|
12.6
|
1.0
|
N1
|
D:DG11
|
3.9
|
12.4
|
1.0
|
N1
|
D:DG2
|
3.9
|
12.0
|
1.0
|
N1
|
D:DG5
|
3.9
|
12.3
|
1.0
|
N1
|
D:DG6
|
4.0
|
12.0
|
1.0
|
N1
|
D:DG15
|
4.0
|
12.3
|
1.0
|
C5
|
D:DG1
|
4.7
|
12.2
|
1.0
|
C5
|
D:DG14
|
4.7
|
12.2
|
1.0
|
C5
|
D:DG5
|
4.8
|
13.0
|
1.0
|
C5
|
D:DG10
|
4.8
|
12.7
|
1.0
|
C7
|
D:DT9
|
4.9
|
12.9
|
1.0
|
C5
|
D:DG11
|
4.9
|
12.6
|
1.0
|
C5
|
D:DG2
|
5.0
|
11.8
|
1.0
|
|
Lead binding site 5 out
of 6 in 7d32
Go back to
Lead Binding Sites List in 7d32
Lead binding site 5 out
of 6 in the The Tba-PB2+ Complex in P41212 Space Group
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 5 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Pb101
b:14.8
occ:1.00
|
O6
|
E:DG1
|
2.5
|
13.3
|
1.0
|
O6
|
E:DG10
|
2.5
|
13.5
|
1.0
|
O6
|
E:DG14
|
2.6
|
13.3
|
1.0
|
O6
|
E:DG5
|
2.6
|
13.5
|
1.0
|
O6
|
E:DG2
|
2.7
|
13.8
|
1.0
|
O6
|
E:DG11
|
2.7
|
15.8
|
1.0
|
O6
|
E:DG6
|
2.7
|
14.1
|
1.0
|
O6
|
E:DG15
|
2.8
|
13.8
|
1.0
|
C6
|
E:DG10
|
3.5
|
14.2
|
1.0
|
C6
|
E:DG14
|
3.5
|
14.1
|
1.0
|
C6
|
E:DG5
|
3.5
|
14.6
|
1.0
|
C6
|
E:DG1
|
3.5
|
13.3
|
1.0
|
C6
|
E:DG11
|
3.6
|
16.1
|
1.0
|
C6
|
E:DG2
|
3.6
|
13.8
|
1.0
|
C6
|
E:DG6
|
3.7
|
15.1
|
1.0
|
C6
|
E:DG15
|
3.8
|
13.9
|
1.0
|
N1
|
E:DG5
|
3.8
|
14.6
|
1.0
|
N1
|
E:DG10
|
3.8
|
14.3
|
1.0
|
N1
|
E:DG14
|
3.8
|
14.7
|
1.0
|
N1
|
E:DG11
|
3.9
|
15.7
|
1.0
|
N1
|
E:DG1
|
3.9
|
12.9
|
1.0
|
N1
|
E:DG2
|
3.9
|
13.9
|
1.0
|
N1
|
E:DG6
|
4.0
|
15.3
|
1.0
|
N1
|
E:DG15
|
4.1
|
13.1
|
1.0
|
C5
|
E:DG14
|
4.7
|
14.7
|
1.0
|
C5
|
E:DG1
|
4.7
|
13.8
|
1.0
|
C5
|
E:DG10
|
4.7
|
15.2
|
1.0
|
C5
|
E:DG5
|
4.7
|
15.6
|
1.0
|
C7
|
E:DT9
|
4.8
|
13.8
|
1.0
|
C5
|
E:DG11
|
4.9
|
17.1
|
1.0
|
C5
|
E:DG2
|
4.9
|
14.2
|
1.0
|
C7
|
E:DT4
|
5.0
|
14.3
|
1.0
|
C5
|
E:DG6
|
5.0
|
15.9
|
1.0
|
|
Lead binding site 6 out
of 6 in 7d32
Go back to
Lead Binding Sites List in 7d32
Lead binding site 6 out
of 6 in the The Tba-PB2+ Complex in P41212 Space Group
Mono view
Stereo pair view
|
A full contact list of Lead with other atoms in the Pb binding
site number 6 of The Tba-PB2+ Complex in P41212 Space Group within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Pb101
b:20.7
occ:1.00
|
O6
|
F:DG10
|
2.5
|
18.7
|
1.0
|
O6
|
F:DG14
|
2.6
|
18.4
|
1.0
|
O6
|
F:DG11
|
2.6
|
19.6
|
1.0
|
O6
|
F:DG5
|
2.6
|
19.6
|
1.0
|
O6
|
F:DG1
|
2.7
|
18.7
|
1.0
|
O6
|
F:DG6
|
2.7
|
17.4
|
1.0
|
O6
|
F:DG15
|
2.7
|
20.4
|
1.0
|
O6
|
F:DG2
|
2.7
|
19.5
|
1.0
|
C6
|
F:DG5
|
3.5
|
18.9
|
1.0
|
C6
|
F:DG14
|
3.5
|
19.2
|
1.0
|
C6
|
F:DG10
|
3.5
|
19.6
|
1.0
|
C6
|
F:DG1
|
3.6
|
19.5
|
1.0
|
C6
|
F:DG11
|
3.6
|
19.0
|
1.0
|
C6
|
F:DG2
|
3.6
|
20.0
|
1.0
|
C6
|
F:DG6
|
3.6
|
19.4
|
1.0
|
C6
|
F:DG15
|
3.7
|
21.4
|
1.0
|
N1
|
F:DG5
|
3.8
|
18.8
|
1.0
|
N1
|
F:DG2
|
3.8
|
20.9
|
1.0
|
N1
|
F:DG1
|
3.8
|
18.9
|
1.0
|
N1
|
F:DG10
|
3.9
|
20.2
|
1.0
|
N1
|
F:DG14
|
3.9
|
18.9
|
1.0
|
N1
|
F:DG11
|
3.9
|
18.6
|
1.0
|
N1
|
F:DG6
|
3.9
|
19.0
|
1.0
|
N1
|
F:DG15
|
3.9
|
21.4
|
1.0
|
C5
|
F:DG14
|
4.7
|
20.6
|
1.0
|
C5
|
F:DG5
|
4.7
|
18.9
|
1.0
|
C5
|
F:DG10
|
4.7
|
20.1
|
1.0
|
C7
|
F:DT9
|
4.8
|
24.7
|
1.0
|
C5
|
F:DG1
|
4.8
|
21.5
|
1.0
|
C5
|
F:DG11
|
4.9
|
19.1
|
1.0
|
C5
|
F:DG2
|
4.9
|
20.2
|
1.0
|
C5
|
F:DG6
|
4.9
|
20.5
|
1.0
|
C5
|
F:DG15
|
5.0
|
23.1
|
1.0
|
|
Reference:
H.H.Liu,
Y.Q.Gao,
J.Sheng,
J.H.Gan.
The Tba-PB2+ Complex in P41212 Space Group To Be Published.
Page generated: Thu Oct 10 10:12:05 2024
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