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Lead in PDB 5xm8: Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb.

Enzymatic activity of Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb.

All present enzymatic activity of Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb.:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb., PDB code: 5xm8 was solved by H.H.Liu, J.H.Gan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.71 / 2.55
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 98.727, 118.848, 235.979, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 28.3

Lead Binding Sites:

The binding sites of Lead atom in the Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb. (pdb code 5xm8). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total only one binding site of Lead was determined in the Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb., PDB code: 5xm8:

Lead binding site 1 out of 1 in 5xm8

Go back to Lead Binding Sites List in 5xm8
Lead binding site 1 out of 1 in the Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb.


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of Crystal Structure of Asfvpolx in Complex with Dna Enzyme and Pb. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pb101

b:0.9
occ:0.40
O F:HOH101 2.5 51.3 0.4
O6 E:DG16 2.9 76.5 1.0
C6 E:DG16 3.9 75.6 1.0
N7 E:DG16 4.1 69.2 1.0
C5 E:DG16 4.4 67.9 1.0
N2 E:DG19 4.4 66.7 1.0
C7 E:DT21 5.0 68.3 1.0

Reference:

H.Liu, X.Yu, Y.Chen, J.Zhang, B.Wu, L.Zheng, P.Haruehanroengra, R.Wang, S.Li, J.Lin, J.Li, J.Sheng, Z.Huang, J.Ma, J.Gan. Crystal Structure of An Rna-Cleaving Dnazyme. Nat Commun V. 8 2006 2017.
ISSN: ESSN 2041-1723
PubMed: 29222499
DOI: 10.1038/S41467-017-02203-X
Page generated: Thu Oct 10 10:11:34 2024

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