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Lead in PDB 5kb0: Crystal Structure of A Tris-Thiolate Pb(II) Complex in A De Novo Three-Stranded Coiled Coil Peptide

Protein crystallography data

The structure of Crystal Structure of A Tris-Thiolate Pb(II) Complex in A De Novo Three-Stranded Coiled Coil Peptide, PDB code: 5kb0 was solved by L.Ruckthong, M.L.Zastrow, J.A.Stuckey, V.L.Pecoraro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.18 / 2.13
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 38.117, 38.117, 144.455, 90.00, 90.00, 120.00
R / Rfree (%) 20.6 / 23.7

Other elements in 5kb0:

The structure of Crystal Structure of A Tris-Thiolate Pb(II) Complex in A De Novo Three-Stranded Coiled Coil Peptide also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Lead Binding Sites:

The binding sites of Lead atom in the Crystal Structure of A Tris-Thiolate Pb(II) Complex in A De Novo Three-Stranded Coiled Coil Peptide (pdb code 5kb0). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total only one binding site of Lead was determined in the Crystal Structure of A Tris-Thiolate Pb(II) Complex in A De Novo Three-Stranded Coiled Coil Peptide, PDB code: 5kb0:

Lead binding site 1 out of 1 in 5kb0

Go back to Lead Binding Sites List in 5kb0
Lead binding site 1 out of 1 in the Crystal Structure of A Tris-Thiolate Pb(II) Complex in A De Novo Three-Stranded Coiled Coil Peptide


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of Crystal Structure of A Tris-Thiolate Pb(II) Complex in A De Novo Three-Stranded Coiled Coil Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb103

b:48.3
occ:0.25
SG A:CYS16 2.6 44.4 0.8
SG A:CYS16 2.7 42.2 0.2
CB A:CYS16 3.6 39.1 0.8
CB A:CYS16 3.8 38.4 0.2
CA A:CYS16 4.3 37.1 0.2
CA A:CYS16 4.3 37.5 0.8
CD1 A:LEU19 4.6 46.9 1.0

Reference:

L.Ruckthong, M.L.Zastrow, J.A.Stuckey, V.L.Pecoraro. A Crystallographic Examination of Predisposition Versus Preorganization in De Novo Designed Metalloproteins. J.Am.Chem.Soc. V. 138 11979 2016.
ISSN: ESSN 1520-5126
PubMed: 27532255
DOI: 10.1021/JACS.6B07165
Page generated: Thu Oct 10 10:09:41 2024

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