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Lead in PDB 1v0d: Crystal Structure of Caspase-Activated Dnase (Cad)

Protein crystallography data

The structure of Crystal Structure of Caspase-Activated Dnase (Cad), PDB code: 1v0d was solved by E.-J.Woo, Y.-G.Kim, M.-S.Kim, W.-D.Han, S.Shin, B.-H.Oh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30 / 2.6
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 110.189, 110.189, 73.982, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 24.6

Other elements in 1v0d:

The structure of Crystal Structure of Caspase-Activated Dnase (Cad) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom

Lead Binding Sites:

The binding sites of Lead atom in the Crystal Structure of Caspase-Activated Dnase (Cad) (pdb code 1v0d). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total only one binding site of Lead was determined in the Crystal Structure of Caspase-Activated Dnase (Cad), PDB code: 1v0d:

Lead binding site 1 out of 1 in 1v0d

Go back to Lead Binding Sites List in 1v0d
Lead binding site 1 out of 1 in the Crystal Structure of Caspase-Activated Dnase (Cad)


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of Crystal Structure of Caspase-Activated Dnase (Cad) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb601

b:0.2
occ:1.00
SG A:CYS197 3.0 75.8 1.0
CB A:CYS197 3.5 65.4 1.0
NZ A:LYS201 3.9 67.5 1.0
CE A:LYS201 4.6 68.8 1.0
CA A:CYS197 4.9 63.3 1.0

Reference:

E.-J.Woo, Y.-G.Kim, M.-S.Kim, W.-D.Han, S.Shin, H.Robinson, S.-Y.Park, B.-H.Oh. Structural Mechanism For Inactivation and Activation of Cad/DFF40 in the Apoptotic Pathway Mol.Cell V. 14 531 2004.
ISSN: ISSN 1097-2765
PubMed: 15149602
DOI: 10.1016/S1097-2765(04)00258-8
Page generated: Wed Dec 16 02:02:02 2020

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