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Lead in PDB 1sn8: Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative)

Protein crystallography data

The structure of Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative), PDB code: 1sn8 was solved by M.Schubert, R.E.Edge, P.Lario, M.A.Cook, N.C.J.Strynadka, G.A.Mackie, L.P.Mcintosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 70.580, 70.580, 87.902, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 23.2

Lead Binding Sites:

The binding sites of Lead atom in the Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative) (pdb code 1sn8). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total 2 binding sites of Lead where determined in the Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative), PDB code: 1sn8:
Jump to Lead binding site number: 1; 2;

Lead binding site 1 out of 2 in 1sn8

Go back to Lead Binding Sites List in 1sn8
Lead binding site 1 out of 2 in the Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative)


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb604

b:27.4
occ:0.60
NE2 A:HIS85 2.5 17.8 1.0
CD2 A:HIS85 3.4 19.8 1.0
CE1 A:HIS85 3.5 21.2 1.0
CG A:HIS85 4.6 17.9 1.0
ND1 A:HIS85 4.6 20.7 1.0

Lead binding site 2 out of 2 in 1sn8

Go back to Lead Binding Sites List in 1sn8
Lead binding site 2 out of 2 in the Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative)


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 2 of Crystal Structure of the S1 Domain of Rnase E From E. Coli (Pb Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb605

b:35.7
occ:0.16
OE2 A:GLU72 2.2 23.0 1.0
OE1 A:GLU72 2.9 19.2 1.0
CD A:GLU72 2.9 19.3 1.0
O A:HOH724 2.9 37.0 1.0
O A:HOH712 4.1 37.5 1.0
CG A:GLU72 4.4 16.4 1.0
OD2 A:ASP105 4.9 42.5 1.0
OG1 A:THR117 5.0 15.9 1.0

Reference:

M.Schubert, R.E.Edge, P.Lario, M.A.Cook, N.C.Strynadka, G.A.Mackie, L.P.Mcintosh. Structural Characterization of the Rnase E S1 Domain and Identification of Its Oligonucleotide-Binding and Dimerization Interfaces. J.Mol.Biol. V. 341 37 2004.
ISSN: ISSN 0022-2836
PubMed: 15312761
DOI: 10.1016/J.JMB.2004.05.061
Page generated: Wed Dec 16 02:01:59 2020

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