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Lead in PDB 1b6g: Haloalkane Dehalogenase at pH 5.0 Containing Chloride

Enzymatic activity of Haloalkane Dehalogenase at pH 5.0 Containing Chloride

All present enzymatic activity of Haloalkane Dehalogenase at pH 5.0 Containing Chloride:
3.8.1.5;

Protein crystallography data

The structure of Haloalkane Dehalogenase at pH 5.0 Containing Chloride, PDB code: 1b6g was solved by I.S.Ridder, H.J.Rozeboom, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.15
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 92.180, 72.029, 40.909, 90.00, 90.00, 90.00
R / Rfree (%) 10.6 / 14.5

Other elements in 1b6g:

The structure of Haloalkane Dehalogenase at pH 5.0 Containing Chloride also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Lead Binding Sites:

The binding sites of Lead atom in the Haloalkane Dehalogenase at pH 5.0 Containing Chloride (pdb code 1b6g). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total 2 binding sites of Lead where determined in the Haloalkane Dehalogenase at pH 5.0 Containing Chloride, PDB code: 1b6g:
Jump to Lead binding site number: 1; 2;

Lead binding site 1 out of 2 in 1b6g

Go back to Lead Binding Sites List in 1b6g
Lead binding site 1 out of 2 in the Haloalkane Dehalogenase at pH 5.0 Containing Chloride


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of Haloalkane Dehalogenase at pH 5.0 Containing Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb150

b:10.6
occ:0.14
PB A:CSB150 0.0 10.6 0.1
SG A:CSB150 1.6 13.4 1.0
CE A:MET152 2.2 12.4 0.9
CB A:CSB150 3.2 10.6 1.0
CE1 A:PHE128 3.5 11.2 1.0
O A:LEU151 3.6 12.7 1.0
C A:CSB150 3.7 10.2 1.0
N A:LEU151 3.7 10.8 1.0
CE2 A:PHE164 3.8 11.3 1.0
CA A:CSB150 3.8 10.0 1.0
C A:LEU151 3.9 10.8 1.0
CD1 A:PHE128 3.9 10.7 1.0
SD A:MET152 4.0 12.5 0.9
O A:PHE161 4.0 10.5 1.0
CZ A:PHE128 4.0 11.3 1.0
CB A:PHE161 4.0 10.1 1.0
CZ A:PHE164 4.1 11.3 1.0
N A:CSB150 4.1 10.2 1.0
O A:CSB150 4.2 11.8 1.0
CA A:LEU151 4.4 10.9 1.0
CA A:PHE161 4.4 10.1 1.0
N A:MET152 4.5 11.0 1.0
CG A:PHE161 4.5 10.7 1.0
CG A:MET152 4.7 11.4 0.9
CD2 A:LEU263 4.7 12.7 1.0
C A:PHE161 4.7 9.9 1.0
CG A:PHE128 4.8 9.8 1.0
CA A:MET152 4.8 11.2 1.0
CE2 A:PHE128 4.8 11.8 1.0
CD1 A:PHE161 4.8 10.6 1.0
CD2 A:PHE164 4.9 10.5 1.0
CG A:MET152 4.9 10.9 0.1
NH2 A:ARG229 5.0 11.1 1.0

Lead binding site 2 out of 2 in 1b6g

Go back to Lead Binding Sites List in 1b6g
Lead binding site 2 out of 2 in the Haloalkane Dehalogenase at pH 5.0 Containing Chloride


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 2 of Haloalkane Dehalogenase at pH 5.0 Containing Chloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pb233

b:14.7
occ:0.05
PB A:CSB233 0.0 14.7 0.1
SG A:CSB233 1.6 13.3 1.0
CD1 A:PHE99 2.0 11.7 1.0
CE1 A:PHE99 2.1 13.9 1.0
CG A:PHE99 2.5 12.3 1.0
CB A:CSB233 2.6 12.5 1.0
CZ A:PHE99 2.7 13.8 1.0
CD2 A:PHE99 3.1 13.4 1.0
CE2 A:PHE99 3.1 14.3 1.0
CA A:CSB233 3.2 12.4 1.0
SD A:MET152 3.4 14.9 0.1
CB A:PHE99 3.6 13.1 1.0
O A:HOH2072 3.7 14.9 1.0
CB A:MET152 3.8 12.7 0.1
C A:CSB233 3.8 11.4 1.0
OG A:SER237 3.8 12.6 1.0
O A:CSB233 3.8 12.2 1.0
CB A:MET152 3.9 12.4 0.9
CG A:MET152 4.1 10.9 0.1
O A:HOH2064 4.3 16.6 1.0
CG A:MET152 4.5 11.4 0.9
N A:CSB233 4.5 12.7 1.0
CE A:MET152 4.6 23.7 0.1
O A:MET152 4.7 12.3 1.0
N A:ILE234 4.8 12.0 1.0
CA A:PHE99 4.8 11.7 1.0
CZ3 A:TRP125 4.9 14.2 1.0

Reference:

I.S.Ridder, H.J.Rozeboom, B.W.Dijkstra. Haloalkane Dehalogenase From Xanthobacter Autotrophicus GJ10 Refined at 1.15 A Resolution. Acta Crystallogr.,Sect.D V. 55 1273 1999.
ISSN: ISSN 0907-4449
PubMed: 10393294
DOI: 10.1107/S090744499900534X
Page generated: Wed Dec 16 02:01:54 2020

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