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Lead in PDB 1afv: Hiv-1 Capsid Protein (P24) Complex with FAB25.3

Protein crystallography data

The structure of Hiv-1 Capsid Protein (P24) Complex with FAB25.3, PDB code: 1afv was solved by C.Momany, L.C.Kovari, A.J.Prongay, W.Keller, R.K.Gitti, B.M.Lee, A.E.Gorbalenya, L.Tong, J.Mcclure, L.S.Ehrlich, M.F.Summers, C.Carter, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 3.70
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 119.900, 92.300, 149.300, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 32.4

Lead Binding Sites:

The binding sites of Lead atom in the Hiv-1 Capsid Protein (P24) Complex with FAB25.3 (pdb code 1afv). This binding sites where shown within 5.0 Angstroms radius around Lead atom.
In total 2 binding sites of Lead where determined in the Hiv-1 Capsid Protein (P24) Complex with FAB25.3, PDB code: 1afv:
Jump to Lead binding site number: 1; 2;

Lead binding site 1 out of 2 in 1afv

Go back to Lead Binding Sites List in 1afv
Lead binding site 1 out of 2 in the Hiv-1 Capsid Protein (P24) Complex with FAB25.3


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 1 of Hiv-1 Capsid Protein (P24) Complex with FAB25.3 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Pb218

b:13.1
occ:0.76
OE2 L:GLU83 2.3 7.3 1.0
CD L:GLU83 2.4 7.3 1.0
OE1 L:GLU83 2.5 7.3 1.0
CG L:GLU83 3.4 7.3 1.0
CG L:PRO81 4.7 7.3 1.0
CB L:GLU83 4.8 7.3 1.0
CB L:PRO81 4.9 7.3 1.0

Lead binding site 2 out of 2 in 1afv

Go back to Lead Binding Sites List in 1afv
Lead binding site 2 out of 2 in the Hiv-1 Capsid Protein (P24) Complex with FAB25.3


Mono view


Stereo pair view

A full contact list of Lead with other atoms in the Pb binding site number 2 of Hiv-1 Capsid Protein (P24) Complex with FAB25.3 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Pb218

b:17.6
occ:0.87
CD M:GLU83 2.2 8.1 1.0
OE1 M:GLU83 2.2 8.1 1.0
OE2 M:GLU83 2.3 8.1 1.0
CG M:GLU83 3.3 8.1 1.0
CB M:GLU83 4.7 8.1 1.0
CG M:PRO81 4.9 8.1 1.0

Reference:

C.Momany, L.C.Kovari, A.J.Prongay, W.Keller, R.K.Gitti, B.M.Lee, A.E.Gorbalenya, L.Tong, J.Mcclure, L.S.Ehrlich, M.F.Summers, C.Carter, M.G.Rossmann. Crystal Structure of Dimeric Hiv-1 Capsid Protein. Nat.Struct.Biol. V. 3 763 1996.
ISSN: ISSN 1072-8368
PubMed: 8784350
DOI: 10.1038/NSB0996-763
Page generated: Wed Dec 16 02:01:55 2020

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